Categories

• papers 13
• paper 13
• protocols 6
• protocol 6
• data 2
• blog 7
• news 17
• team 26
• misc 3
• manual 8
• projects 1
• home 2

papers

• riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow
• Using prototyping to choose a bioinformatics workflow management system
• Repeated evolution of inactive pseudonucleases in a fungal branch of the Dis3/RNase II family of nucleases
• Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition interface
• Daily cycles of reversible protein condensation in cyanobacteria
• Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom
• riboviz: analysis and visualization of ribosome profiling datasets.
• Extremely fast and incredibly close: co-transcriptional splicing in budding yeast
• Reversible, specific, active aggregates of endogenous proteins assemble upon heat stress
• Dying mRNA tells a story of its life
• A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus
• A Model for the Evolution of Biological Specificity: a Cross-Reacting DNA-Binding Protein Causes Plasmid Incompatibility
• Estimating selection on synonymous codon usage from noisy experimental data

paper

• riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow
• Using prototyping to choose a bioinformatics workflow management system
• Repeated evolution of inactive pseudonucleases in a fungal branch of the Dis3/RNase II family of nucleases
• Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition interface
• Daily cycles of reversible protein condensation in cyanobacteria
• Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom
• riboviz: analysis and visualization of ribosome profiling datasets.
• Extremely fast and incredibly close: co-transcriptional splicing in budding yeast
• Reversible, specific, active aggregates of endogenous proteins assemble upon heat stress
• Dying mRNA tells a story of its life
• A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus
• A Model for the Evolution of Biological Specificity: a Cross-Reacting DNA-Binding Protein Causes Plasmid Incompatibility
• Estimating selection on synonymous codon usage from noisy experimental data

protocols

• RNATagSeq: multiplexed library preparation for Illumina RNA sequencing
• Yeast total RNA isolation protocol
• Sucrose gradient protocol for polysome profiles
• Anti-RNA blotting with chemiluminescent detection
• Supernatant/pellet fractionation of budding yeast cells by cryogenic lysis
• Chloroform-methanol extraction of proteins

protocol

• RNATagSeq: multiplexed library preparation for Illumina RNA sequencing
• Yeast total RNA isolation protocol
• Sucrose gradient protocol for polysome profiles
• Anti-RNA blotting with chemiluminescent detection
• Supernatant/pellet fractionation of budding yeast cells by cryogenic lysis
• Chloroform-methanol extraction of proteins

data

• Disaggregation assay data visualization
• Aggregation assay data visualization

blog

• Favourite Papers In The Lab
• Safe and Productive Science-ing During an Epidemic
• Collaborative PhD opportunities for October 2020 entry (Archive)
• Scientist and Parent: The Bereaved Parent
• PhD opportunities for October 2019 entry (Archive)
• PhD opportunity on machine learning of multi-omics data (past)
• New lab, new website

news

• Workflows paper accepted
• Welcoming new lab members for 2021
• Evolution of the Ssd1 pseudonuclease
• Working with the Software Sustainability Institute
• tidyqpcr - Quantitative PCR analysis in the tidyverse.
• Preprints on the Ssd1 RNA-binding protein
• New paper on protein synthesis in fungi
• PhD opportunities on RNA and environmental sensing
• Welcome new lab members
• PhD opportunities on RNA and fungal adaptation
• Welcome Sam Haynes
• Welcome Laura Tuck
• Welcome undergrad student Aliaksandr Damenikan
• PhD opportunity on machine learning of multi-omics data
• Welcome lab manager Rosey Bayne
• Come work on RNA Systems Biology of Fungi
• New Lab Website

team

• Zhang Yuxuan
• Paddy Harker
• Aphena Huang
• Sophie Winterbourne
• Emma MacKenzie
• Louis Headley
• Rachael Murray
• Ke Xuejia
• Siyin Xue
• Wanyue Li
• Shanuo Wei
• Eszter Denes
• Ania Kurowska
• Jamie Auxillos
• Marah Jnied
• Weronika Danecka
• Liz Hughes
• Felicity Anderson
• Clémence Alibert
• Savvas Kourtis
• Abhishek Jain
• Samuel Haynes
• Laura Tuck
• Aliaksandr Damenikan
• Rosemary A. L. Bayne
• Edward W. J. Wallace

misc

• The Wallace Lab
• Links
• About

manual

• Lab jobs and ordering
• Lab notebook guidelines
• Lab standup
• Meetings: Lab, subgroup, and 1-1
• Where lab stuff belongs
• Where data belongs
• New start guide
• Data Management Plan

projects

• Research Overview

home

• The Wallace Lab
• Research Overview