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Limitations of composability of cis-regulatory elements in messenger RNA
riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow
Post-transcriptional control of fungal cell wall synthesis
The benefits of an open-science approach in student research projects
Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition interface
Using prototyping to choose a bioinformatics workflow management system
Repeated evolution of inactive pseudonucleases in a fungal branch of the Dis3/RNase II family of nucleases
Daily cycles of reversible protein condensation in cyanobacteria
Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom
riboviz: analysis and visualization of ribosome profiling datasets.
Extremely fast and incredibly close: co-transcriptional splicing in budding yeast
Reversible, specific, active aggregates of endogenous proteins assemble upon heat stress
Dying mRNA tells a story of its life
A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus
A Model for the Evolution of Biological Specificity: a Cross-Reacting DNA-Binding Protein Causes Plasmid Incompatibility
Estimating selection on synonymous codon usage from noisy experimental data
paper
Limitations of composability of cis-regulatory elements in messenger RNA
riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow
Post-transcriptional control of fungal cell wall synthesis
The benefits of an open-science approach in student research projects
Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition interface
Using prototyping to choose a bioinformatics workflow management system
Repeated evolution of inactive pseudonucleases in a fungal branch of the Dis3/RNase II family of nucleases
Daily cycles of reversible protein condensation in cyanobacteria
Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom
riboviz: analysis and visualization of ribosome profiling datasets.
Extremely fast and incredibly close: co-transcriptional splicing in budding yeast
Reversible, specific, active aggregates of endogenous proteins assemble upon heat stress
Dying mRNA tells a story of its life
A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus
A Model for the Evolution of Biological Specificity: a Cross-Reacting DNA-Binding Protein Causes Plasmid Incompatibility
Estimating selection on synonymous codon usage from noisy experimental data
protocols
RNATagSeq: multiplexed library preparation for Illumina RNA sequencing
Yeast total RNA isolation protocol
Sucrose gradient protocol for polysome profiles
Anti-RNA blotting with chemiluminescent detection
Supernatant/pellet fractionation of budding yeast cells by cryogenic lysis
Chloroform-methanol extraction of proteins
protocol
RNATagSeq: multiplexed library preparation for Illumina RNA sequencing
Yeast total RNA isolation protocol
Sucrose gradient protocol for polysome profiles
Anti-RNA blotting with chemiluminescent detection
Supernatant/pellet fractionation of budding yeast cells by cryogenic lysis
Chloroform-methanol extraction of proteins
data
Disaggregation assay data visualization
Aggregation assay data visualization
blog
How to ask for data from a paper
How we combine open science and student research projects
Favourite Papers In The Lab
Safe and Productive Science-ing During an Epidemic
Collaborative PhD opportunities for October 2020 entry (Archive)
Scientist and Parent: The Bereaved Parent
PhD opportunities for October 2019 entry (Archive)
PhD opportunity on machine learning of multi-omics data (past)
New lab, new website
news
Review paper on control of cell walls
Farewell Flic
Farewell Emma and Sophie
Preprint on combining regulatory elements
Alternative RNA recognition by the Ssd1 RNA-binding protein
Workflows paper accepted
Welcoming new lab members for 2021
Evolution of the Ssd1 pseudonuclease
Working with the Software Sustainability Institute
tidyqpcr - Quantitative PCR analysis in the tidyverse.
Preprints on the Ssd1 RNA-binding protein
New paper on protein synthesis in fungi
PhD opportunities on RNA and environmental sensing
Welcome new lab members
PhD opportunities on RNA and fungal adaptation
Welcome Sam Haynes
Welcome Laura Tuck
Welcome undergrad student Aliaksandr Damenikan
PhD opportunity on machine learning of multi-omics data
Welcome lab manager Rosey Bayne
Come work on RNA Systems Biology of Fungi
New Lab Website
team
Chong Jing Qi
Zhang Yuxuan
Paddy Harker
Aphena Huang
Sophie Winterbourne
Emma MacKenzie
Louis Headley
Rachael Murray
Ke Xuejia
Siyin Xue
Wanyue Li
Shanuo Wei
Eszter Denes
Ania Kurowska
Jamie Auxillos
Marah Jnied
Hanqin Du
Weronika Danecka
Liz Hughes
Felicity Anderson
Clémence Alibert
Savvas Kourtis
Abhishek Jain
Samuel Haynes
Laura Tuck
Aliaksandr Damenikan
Rosemary A. L. Bayne
Pakkanan Chansongkrow
Edward W. J. Wallace
misc
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Institute for Cell Biology, School of Biological Sciences
The University of Edinburgh
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